IMARIS is a software for the visualization, segmentation and interpretation of 3D and 4D microscopy datasets. The 2-day workshop (July 01 +02) covers various topics from object classification, spatial statistics to batch processing, the detailed program can be found below. In addition, on July 03 (not mandatory) the workshop trainer offers dedicated time-slots for discussing individual projects and problems.

Date: July 01 + 02
Language: english
Venue: tba
Registration: https://grade.srv.studiumdigitale.uni-frankfurt.de/drupal-7/node/99255/register
Deadline for registration: June 22

Detailed program:

Day 1

General Overview
Hands-On I: Import of Datasets, Stitching
Hands-On II: Visualisation
Hands-On III: Basic Surface and Spot Segmentation, Visualisation of segmented objects
Animation of original data and segmented objects
Hands-on IV: Machine Learning Segmentation
Hands-On V: Object Relationships, basic Object Classification
Hands-On VI: Vantage Plotting for Surfaces and Spots, Spatial Statistics
Hands-On VII: Object Classification via Machine Learning

Day 2

Hands-On I: Tracking of Moving Objects
Hands-On II: Classification and Biological Events in Time Series
Hands-On III: Filament Tracing (Vessels and Neurons)
Hands-On IV: Cell
Hands-On V: Batch Processing
Free work on own datasets

Day 3 (not mandatory)

Individual meetings, prebookable

We are looking forward to your participation!